Dear all,
I am encountering following error when i run Hippocampus subfield
segmentation
"run_segmentSubjectT1_autoEstimateAlveusML.sh: line 46: 11266
Aborted "${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML
$args ".
I am annexing the log file for your notice please kindly review it and let
me know why its getting intermittently aborted .
Thanks
Vasudev
#--------------------------------------------
#@# Hippocampal Subfields processing (T1 only) left Fri Jul 21 13:57:20 EDT 2017
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/runtime/glnxa64:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/bin/glnxa64:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/sys/os/glnxa64:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/server:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/client:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64:/project/m/mchakrav/quarantine/ANTs/git/build/lib:/scinet/gpc/Libraries/zlib-1.2.8/lib:/scinet/gpc/tools/Python/Python272-shared/lib:/scinet/gpc/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64:/scinet/gpc/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64:/scinet/gpc/compilers/gcc-5.2.0/requiredlibs/lib:/scinet/gpc/compilers/gcc-5.2.0/lib:/scinet/gpc/compilers/gcc-5.2.0/lib64:/scinet/gpc/lib64_6.4:/scinet/gpc/lib64_6.4/mysql:/scinet/gpc/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64:/scinet/gpc/intel/debugger_2016/libipt/intel64/lib:/scinet/gpc/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64
terminate called after throwing an instance of 'std::runtime_error'
what(): locale::facet::_S_create_c_locale name not valid
/sgfs1/scratch3/m/mchakrav/vasudev/freesurfer/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 46: 11266 Aborted "${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML $args
#--------------------------------------------
#@# Hippocampal Subfields processing (T1 only) right Fri Jul 21 13:57:20 EDT 2017
------------------------------------------
Setting up environment variables
---
LD_LIBRARY_PATH is .:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/runtime/glnxa64:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/bin/glnxa64:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/sys/os/glnxa64:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/server:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/client:/scratch/m/mchakrav/vasudev/freesurfer/freesurfer/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64:/project/m/mchakrav/quarantine/ANTs/git/build/lib:/scinet/gpc/Libraries/zlib-1.2.8/lib:/scinet/gpc/tools/Python/Python272-shared/lib:/scinet/gpc/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64:/scinet/gpc/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64:/scinet/gpc/compilers/gcc-5.2.0/requiredlibs/lib:/scinet/gpc/compilers/gcc-5.2.0/lib:/scinet/gpc/compilers/gcc-5.2.0/lib64:/scinet/gpc/lib64_6.4:/scinet/gpc/lib64_6.4/mysql:/scinet/gpc/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64:/scinet/gpc/intel/debugger_2016/libipt/intel64/lib:/scinet/gpc/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64
terminate called after throwing an instance of 'std::runtime_error'
what(): locale::facet::_S_create_c_locale name not valid
/sgfs1/scratch3/m/mchakrav/vasudev/freesurfer/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh: line 46: 11332 Aborted "${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML $args
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