HI Elizabeth
that should definitely not happen. Something must have gone pretty
dramatically wrong. If you upload the subject I'll take a look
cheers
Bruce
On Tue, 15 Aug 2017, Elizabeth Hall wrote:
Hi Eugenio,
It looks like the segmentation is missing all of the left hippocampus in the
ASEG.
Is there a way to go in and manually correct this?
Best,
Elizabeth
On Tue, Aug 15, 2017 at 12:54 PM, Iglesias Gonzalez, Eugenio
<e.igles...@ucl.ac.uk> wrote:
Dear Elizabeth,
This is pretty unusual. Would you mind taking a look at
aseg.mgz? Does the segmentation of the (whole) left hippocampus
look fine in ASEG?
Cheers,
/Eugenio
From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of
Elizabeth Hall <ehall1...@gmail.com>
Reply-To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, 15 August 2017 at 17:32
To: "freesurfer@nmr.mgh.harvard.edu"
<freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Help with hippocampal subfield alignment
Hello FreeSurfer Developers,
I have run the hippocampal-subfields-T1 tag on a MP2RAGE scan for one
of my subjects and find that the subfield segmentation for the left
hemisphere only is off (pictures attached). No errors were reported in
the log.
Is there a way to manually reset the alignment for only one
hemisphere? Or is there a reason why it might be failing to segment
that hemisphere?
Thank you,
Elizabeth
--
Elizabeth Hall
ehall1...@gmail.com| +1 559 824 6695
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