when you run mri_annotation2label you can specify the surface (--surface). By default, it uses white, but you can specify pial instead
On 08/21/2017 11:33 AM, Fereshte wrote: > Hello FreeSurfer developers, > Is it possible to have the segmentation labels after the pial surface > is done in FreeSurfer? I mean once you do the topology correction and > expand the inner cortical boundary to make the pial surface ; is it > possible to have the inner and outer cortical boundaries as labels > from pial surface? > Looking forward to hearing from you > Sincerely, > Fereshte Ramezani > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
