Hi experts, To calculate simulations on LGI measures, I ran: mri_glmfit-sim --glmdir lh.MEQ_LGI.glmdir --sim perm 1000 3 permcsd --sim-sign abs --cwpvalthresh .05
But it gives error: ERROR: design matrix is not orthogonal, cannot be used with permutation. I came across a post where its mentioned that: "Alternatively, I have a version of mri_glmfit-sim that will run permutation with non-orthogonal designs. https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_glmfit-sim"; - Douglas N. Greve So I was wondering if I can use this program for LGI measures and run the same command, lets say this new program is: mri_glmfit-sim_new, so can I run the following command (instead of doing PALM): mri_glmfit-sim_new --glmdir lh.MEQ_LGI.glmdir --sim perm 1000 3 permcsd --sim-sign abs --cwpvalthresh .05 Thanks.
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