You could run it with -label-V1 This is run at the end of recon-all and should only take a few min and would change the recon-all.log file.
On 09/21/2017 01:57 PM, STACEY M SCHAEFER wrote: > > Hello, > > > I want to run recon-all again on scans that have already been > hand-edited, the appropriate recon-all flags ran, and resulting output > checked and approved. The images look good, but when the hippocampal > subfield routine was later run on the images, it crashed, leaving an > error in the recon-all.log. We want to be anal, and make sure there > is no error again after running recon-all. In other words, we want > the last line in the recon-all.log to reflect that the images all > completed successfully. > > > Is there a recommended flag (or flags) at this point? In other words, > there are no additional edits to incorporate in the recon-all job, but > we also don't want the earlier edits, control points, etc. ignored in > this last rerun of recon-all. > > > Thank you for your help! > > Stacey > > > > *Stacey M. Schaefer, Ph.D.* > Center for Healthy Minds > > University of Wisconsin-Madison > > 625 W Washington Ave > > Madison WI 53703 > > 608-263-9321 > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
