Hi Vidhu, After your standard recon-all, do:
mri_binarize --i yoursubjectname/mri/aseg.mgz --match 17 --o left_hip.nii mri_binarize --i yoursubjectname/mri/aseg.mgz--match 53 --o right_hip.nii Hope that helps. Best Wishes, Elijah On Wed, Nov 1, 2017 at 5:57 AM, Vidhu Agrawal <mail2vidhu.a...@gmail.com> wrote: > Respected Sir, > > How can i scoop out or separate only hippocampus from a 3D MRI of whole > brain? > > With regards > vidhu agarwal > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Elijah Mak, Gates Scholar PhD Candidate *|* Psychiatry University of Cambridge Trinity College, Cambridge, CB2 1TQ
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