Hi vidhu

use recon-all to process the dataset, then mri_extract_labels or mri_binarize can be used to extract just the hippocampus

cheers
Bruce
On Wed, 1 Nov 2017, Vidhu Agrawal wrote:

Respected Sir,

How can i scoop out or separate  only hippocampus from a 3D MRI of whole brain?

With regards
vidhu agarwal

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