Hi Daiana You should be able to use mri_vol2vol on the aparc+aseg.mgz and the talairach.xfm in the subject's mri/transforms dir.
cheers Bruce On Thu, 9 Nov 2017, Daya P wrote: > Hi All, > I processed a bunch of subjects using recon-all, but now I would like to get > labels from > aparc.a2009s.annot from each subject in MNI space in nii from, the problem is > that the annotation > file (lh and rh) is in subject native space. I have a grey matter mask in MNI > from each subject and > my goal is to have each label from aparc.a2009s.annot to fit that mask. > How can I do this? > > Thank you, > Daiana > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
