Hi all, I am still struggling with my previous question
I processed a bunch of subjects using recon-all, but now I would like to get labels from aparc.a2009s.annot from each subject in MNI space in nii from. How can I obtain the Destrieux labels in nii format in MNI (2mm) How can I do this? Thank you, Daiana On Thu, Nov 9, 2017 at 1:36 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Daiana > > run mri_vol2vol --help. It has a bunch of examples and quite extensive help > (thank you Doug!) > Bruce > > On Thu, 9 Nov 2017, Daya P wrote: > > > Hi Bruce, > > Can you give me some example code? I am not sure where the talairach > would go? > > > > > > On Thu, Nov 9, 2017 at 1:21 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > > Hi Daiana > > > > You should be able to use mri_vol2vol on the aparc+aseg.mgz and the > > talairach.xfm in the subject's mri/transforms dir. > > > > cheers > > Bruce > > > > On Thu, 9 Nov 2017, Daya P wrote: > > > > > Hi All, > > > I processed a bunch of subjects using recon-all, but now I would > like to get labels > > from > > > aparc.a2009s.annot from each subject in MNI space in nii from, > the problem is that the > > annotation > > > file (lh and rh) is in subject native space. I have a grey > matter mask in MNI from > > each subject and > > > my goal is to have each label from aparc.a2009s.annot to fit > that mask. > > > How can I do this? > > > > > > Thank you, > > > Daiana > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom > it is > > addressed. If you believe this e-mail was sent to you in error and the > e-mail > > contains patient information, please contact the Partners Compliance > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > > but does not contain patient information, please contact the sender and > properly > > dispose of the e-mail. > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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