Hi Daiana run mri_vol2vol --help. It has a bunch of examples and quite extensive help (thank you Doug!) Bruce
On Thu, 9 Nov 2017, Daya P wrote: > Hi Bruce, > Can you give me some example code? I am not sure where the talairach would go? > > > On Thu, Nov 9, 2017 at 1:21 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > Hi Daiana > > You should be able to use mri_vol2vol on the aparc+aseg.mgz and the > talairach.xfm in the subject's mri/transforms dir. > > cheers > Bruce > > On Thu, 9 Nov 2017, Daya P wrote: > > > Hi All, > > I processed a bunch of subjects using recon-all, but now I would like > to get labels > from > > aparc.a2009s.annot from each subject in MNI space in nii from, the > problem is that the > annotation > > file (lh and rh) is in subject native space. I have a grey matter > mask in MNI from > each subject and > > my goal is to have each label from aparc.a2009s.annot to fit that > mask. > > How can I do this? > > > > Thank you, > > Daiana > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
