Please check the reference TAC. Also, please send the full terminal output
On 11/11/2017 06:07 AM, Conchy PF wrote: > Dear Douglas, > > I had the same problem as Jonathan described in his post "PET > processing seg fault with mri_glmfit --mrtm1" > (https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-January/043144.html). > > In my case, I used this command: > > mri_glmfit --y gtmpvc/km.hb.tac.nii.gz --mrtm1 gtmpvc/km.ref.tac.dat > time.dat --o mrtm1 --no-est-fwhm --nii.gz > > And I got this message: > > /Applications/freesurfer/bin/mri_glmfit: line 3: 27756 Segmentation > fault: 11mri_glmfit.bin "$@" > > Following your advice, I checked if km.hb.tac.nii.gz was all 0 using > > hb = fast_vol2mat( MRIread('km.hb.tac.nii.gz')); > plot(hb) > > in matlab, but that is not the case > > Inline image 1 > > I also checked the table.dat format and it was correct, and I tried > using mri_glmfit.bin command insted, but it did not work. > > Could you give me some advice, so I can keep running the PET surfer > pipeline? > > Thank you in advance and kind regards, > > CP > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
