Run mri_info and see the Orientation string. Eg, LIA
On 11/28/2017 11:47 AM, Yi Li wrote: > > Dear Freesurfer experts, > > I used the following mri_convert command to extract the skull stripped > image and save it to a txt file. The file contains only one column, > and has 256*256*256=16,777,216 rows. Does anybody know the ordering in > which 256*256*256 array is transformed to the vector (eg, which of > R-L, A-P, S-I changes fastest and slowest). Thanks! > > mri_convert $datadir/$subj/mri/brainmask.mgz $target/$subj.txt --ascii > > Best Regards, > > Yi Li (PhD) > > Senior Computational Scientist > > Computational Sciences > > The Jackson Laboratory > > Farmington, CT 06032 > > Tel: 860-837-2156 > > --- > > The information in this email, including attachments, may be > confidential and is intended solely for the addressee(s). If you > believe you received this email by mistake, please notify the sender > by return email as soon as possible. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
