Thank you very much, Dear Andrew! for your expert advise. I really appreciated. Its worked.
Best Regards Manoj On Tue, Jan 16, 2018 at 10:39 PM, Hoopes, Andrew <ahoo...@mgh.harvard.edu> wrote: > Hi Manoj, > > This probably has to do with SIP being enabled, which blocks libraries > stored in /usr. I would suggest disabling SIP and rerunning to see if > that fixes things: > http://osxdaily.com/2015/10/05/disable-rootless-system- > integrity-protection-mac-os-x/ > > best, > Andrew > > > On Jan 16, 2018, at 2:59 AM, Manoj Kumar <verman...@gmail.com> wrote: > > Hello Dear FreeSurfer Experts, > > I am trying to run "recon-all -s subject -localGI" command on my Mac bash > terminal. I am getting following error. > > I am using using Freesurfer V 6.0 and running on MacOS High Sierra > (version 10.13) > > I also run the istallation update :"sudo -E fs_update" as per suggestion > on the release note but still getting same error. > > Any help to resolve this issue would be greatly appreciated. > Thank you so much for all your help and support. > > Best regards > Manoj > > *************************************************************** > Manojs-iMac:cases manojkumar$ export SUBJECTS_DIR=/Users/ > manojkumar/fs_dmd_process/cases/HRUDAY/bert/surf > Manojs-iMac:cases manojkumar$ cd $SUBJECTS_DIR > Manojs-iMac:surf manojkumar$ mris_compute_lgi --i lh.pial > ================= > rm -Rf /Users/manojkumar/fs_dmd_process/cases/HRUDAY/bert/ > surf/tmp-mris_compute_lgi-lh.pial > ================= > ================= > mkdir -p /Users/manojkumar/fs_dmd_process/cases/HRUDAY/bert/ > surf/tmp-mris_compute_lgi-lh.pial > ================= > ================= > mris_fill -c -r 1 lh.pial /Users/manojkumar/fs_dmd_ > process/cases/HRUDAY/bert/surf/tmp-mris_compute_lgi-lh. > pial/lh.pial.filled.mgz > ================= > dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address > Referenced from: /Applications/freesurfer/bin/. > ./lib/gcc/lib/libgomp.1.dylib > Expected in: /usr/lib/libSystem.B.dylib > > dyld: Symbol not found: ___emutls_get_address > Referenced from: /Applications/freesurfer/bin/. > ./lib/gcc/lib/libgomp.1.dylib > Expected in: /usr/lib/libSystem.B.dylib > > Abort > ERROR: mris_fill -c -r 1 lh.pial /Users/manojkumar/fs_dmd_ > process/cases/HRUDAY/bert/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.filled.mgz > failed! > Manojs-iMac:surf manojkumar$ > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
