Use aparc+aseg.mgz
On 1/12/18 5:14 AM, Vidhu Agrawal wrote:
Does freesurfer segments frontal cortex?
If yes the how we can do that
I have tried to do it by using the command :mri_binarize --i aseg.mgz
--o ctx-lh-s_frontal_superior.nii --match 1156
mri_binarize --i aseg.mgz --o ctx-lh-s_frontal_inferior.nii --match 1154
mri_binarize --i aseg.mgz --o ctx-lh-s_frontal_middle.nii --match 1156
mri_binarize --i aseg.mgz --o ctx-lh-g_frontal_inf_operacula.nii
--match 1106
mri_binarize --i aseg.mgz --o ctx-lh-g_frontal_inf_orbital.nii --match
1107
mri_binarize --i aseg.mgz --o ctx-lh-g_frontal_inf_triangula.nii
--match 1108
mri_binarize --i aseg.mgz --o ctx-lh-g_frontal_middle.nii --match 1109
mri_binarize --i aseg.mgz --o ctx-lh-g_frontal_superior.nii --match 1110
but it is not segmenting any region
Looking forward for your reply.
Thanking you
With regards
vidhu agarwal
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