Can you send the terminal output of one of the runs that fails?
On 1/31/18 4:10 PM, Sims, Sara A wrote:
Freesurfers,
I am trying to use a cortical label to label wm. I am using the
following command line:
mri_aparc2aseg --s $patient --annot 8V1 –labelwm
And most of the time in most subjects this works, however sometimes
the output file doesn’t label any wm with the 3000+N or 4000+N like it
usually does. I have tried changing the -wmparc-dmax, -hypo-as-wm,
-smooth_normals. Basically everything I could find but it won’t budge
even though doing other labels in the same person works fine. Fyi: The
original cortical label is also correctly place in the cortical ribbon.
Any ideas?
Please!
Thanks,
Sara Sims
Graduate Research Fellow
University of Alabama at Birmingham
Department of Psychology
205-975-4060
sno...@uab.edu
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