The 2nd contrast (slope) is the one you want.
On 02/05/2018 01:21 PM, std...@virgilio.it wrote: > > Thanks. > > Only for I quick check of my understanding, if I'm using: > > > FSGD File (g1v1.fsgd) > > GroupDescriptorFile 1 > > Title OSGM > > Class Main > > Variables Age > > Input subject1 Main 30 > > Input subject2 Main 40 > > ..... > > > A) Contrast 1 (intercept.mtx) 1 0 > > B) Contrast 2 (slope.mtx) 0 1 > > Considering that my goal is to obtain a map reporting the significant > clusters where the FC is positively/negatively associated with Age, is > this contrast exact? Or it shows the clusters where la FC between seed > and target regions is significant, regressing out the Age? This second > case in not of my interest. > Please suggest a way to reach the first case. > > Thanks > > > Stefano > > > >> Il 5 febbraio 2018 alle 18.27 Douglas Greve >> <gr...@nmr.mgh.harvard.edu> ha scritto: >> >> If you have one class and two variables, then [0 1 0] and [0 0 1] >> >> >> On 2/4/18 10:23 AM, std...@virgilio.it <mailto:std...@virgilio.it> wrote: >>> >>> I would like to find where the functional connectivity is correlated >>> to VARIABLE 1 regressing out the VARIABLE 2. >>> >>> How I should set my contrast.mtx? >>> >>> Thanks >>> >>> >>> Stefano >>> >>>> Il 3 febbraio 2018 alle 19.57 Douglas Greve >>>> <gr...@nmr.mgh.harvard.edu> <mailto:gr...@nmr.mgh.harvard.edu> ha >>>> scritto: >>>> >>>> >>>> >>>> On 2/2/18 7:47 AM, std...@virgilio.it <mailto:std...@virgilio.it> >>>> wrote: >>>>> >>>>> Hi list, >>>>> >>>>> in reference to One Group (One Factor), Two Covariates >>>>> >>>>> https://surfer.nmr.mgh.harvard.edu/fswiki/Fsgdf1G2V#Contrast2age.mtx >>>>> >>>>> that has been applied on FS-FAST fcMRI data >>>>> >>>>> I obtain three folder, respectively, for "main", "covariate 1", >>>>> "covariate 2". >>>>> >>>>> What's meaning the sig.nii.gz that it is produced by mri_glmfit in >>>>> each folder? >>>>> Please correct my conclusions if they are wrong. >>>>> >>>>> 1 - In the "Main" folder, the sig.nii.gz contains the results of >>>>> One-sample t test regressing out the effect of the two covariates. >>>>> >>>> Correct >>>>> >>>>> 2 - In the "Covariate 1" folder, the sig.nii.gz contains the >>>>> significant cluster that are associated with the covariate 1 >>>>> regressing out the effect for the covariate 2. >>>>> >>>> Yes (and the main) >>>>> >>>>> 3 - In the "Covariate 2" folder, the sig.nii.gz contains the >>>>> significant cluster that are associated with the covariate 2 >>>>> regressing out the effect for the covariate 1. >>>>> >>>> Yes (and regressing out the main) >>>>> >>>>> Thanks >>>>> >>>>> >>>>> Stefano >>>>> >>>>> * >>>>> * >>>>> >>>>> * >>>>> * >>>>> >>>>> >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to >>>> whom it is >>>> addressed. If you believe this e-mail was sent to you in error and >>>> the e-mail >>>> contains patient information, please contact the Partners >>>> Compliance HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to >>>> you in error >>>> but does not contain patient information, please contact the sender >>>> and properly >>>> dispose of the e-mail. >> > >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
