Dear Dr. Robert, It hadn't occurred to me, as I am the sole developer of the package. The User Guide should have enough information to get started (so please check it out), but I might add some content to GitHub Pages with specific, tutorial-like information (as opposed to the documentation-style of the User Guide).
Chris On Wed, Feb 7, 2018 at 6:00 AM, gabriel robert < gabriel.hadrien.rob...@gmail.com> wrote: > Dear Dr Watson, > > Many thanks for developping your toolbox, > > Is there any project to propose any "courses" or anything related to > courses to get started with your toolbox, > > Best wishes, > > Gabriel Robert, MD, PhD > Rennes, France > > 2018-02-07 2:14 GMT+01:00 Chris Watson <cwa...@alum.mit.edu>: > >> Dear Freesurfer users, >> >> I am pleased to announce the 2nd major release of my R package for graph >> theory analysis of brain MRI data, "brainGraph". >> The main page on CRAN is at: https://cran.r-project.org/web >> /packages/brainGraph/index.html >> The GitHub repository is at: https://github.com/cwatson/brainGraph >> >> >> *Installation* >> The latest version is already on CRAN for Linux distributions, and should >> be for Windows and Mac OS X soon (but there may be issues on non-Linux >> systems; see Chapter 1 of the User Guide). >> >> To install directly from CRAN: >> > install.packages('brainGraph') >> >> In the meantime (and for development versions), you may install from >> GitHub using the R package "devtools": >> > devtools::install_github('cwatson/brainGraph') >> >> >> *Getting help* >> The new User Guide has been completely overhauled, and now has a >> permanent link at: my GitHub Pages site (PDF warning) >> <https://cwatson.github.io/files/brainGraph_UserGuide.pdf>. Please start >> at the "Preface". >> >> You may also get help by opening an Issue >> <https://github.com/cwatson/brainGraph/issues> on the GitHub repository, >> or join the Google Group >> <https://groups.google.com/forum/?hl=en#%21forum/brainGraph-help>. >> >> >> *New features* >> You can find the release notes/changelog in NEWS.md, at: >> https://github.com/cwatson/brainGraph/blob/master/NEWS.md >> >> Major additions (since v1.0.0) that should be of interest include: >> >> - Vertex- and graph-level *mediation analysis* (chapter 11 of the >> Guide) >> - Multi-threshold permutation correction (MTPC) for GLM analyses >> (chapter 9) >> - Extension of GLM-based functions (including the *network-based >> statistic [NBS]* and MTPC) to allow for multiple contrasts in a >> single function call, and to allow for both T- and F-contrasts >> - Permutation/randomization is now done using the *Freedman-Lane >> algorithm* (as in *randomise* and *PALM*), although models are >> limited to simple GLM's >> - Introduction of R's *S3 classes* to simplify plotting and >> summarizing results >> - Calculation of a network's *s-core* membership >> - Calculation of network *communicability* and vertex *communicability >> betweenness centrality* >> >> Please let me know if you have any issues, bug reports, feature requests, >> etc. >> Chris Watson >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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