Hi
I found a walk around. I got freeview to work by adding by changing line 4 in freeview from source $FREESURFER_HOME/bin/qt_setup to #source $FREESURFER_HOME/bin/qt_setup. Then I am able to use lookup table as colormap. ldd /usr/local/freesurfer/bin/freeview.bin linux-vdso.so.1 (0x00007ffc15bed000) libQtScriptTools.so.4 => /lib64/libQtScriptTools.so.4 (0x00007f78b9f5a000) libQtScript.so.4 => /lib64/libQtScript.so.4 (0x00007f78b9a7d000) libQtOpenGL.so.4 => /lib64/libQtOpenGL.so.4 (0x00007f78b977a000) libQtGui.so.4 => /lib64/libQtGui.so.4 (0x00007f78b8a53000) libQtCore.so.4 => /lib64/libQtCore.so.4 (0x00007f78b854f000) libGL.so.1 => /lib64/libGL.so.1 (0x00007f78b82c3000) libXext.so.6 => /lib64/libXext.so.6 (0x00007f78b80b1000) libvtkverdict.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkverdict.so.5.6 (0x00007f78ba2d1000) libvtkGraphics.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkGraphics.so.5.6 (0x00007f78b7847000) libfreetype.so.6 => /lib64/libfreetype.so.6 (0x00007f78b7592000) libvtkmetaio.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkmetaio.so.5.6 (0x00007f78b740a000) libvtkpng.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkpng.so.5.6 (0x00007f78b72e6000) libvtkzlib.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkzlib.so.5.6 (0x00007f78b71d2000) libvtksqlite.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtksqlite.so.5.6 (0x00007f78b702d000) libvtkImaging.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkImaging.so.5.6 (0x00007f78b6ba8000) libvtkFiltering.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkFiltering.so.5.6 (0x00007f78b6716000) libvtkCommon.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkCommon.so.5.6 (0x00007f78b6321000) libvtksys.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtksys.so.5.6 (0x00007f78b61e1000) libvtkGenericFiltering.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkGenericFiltering.so.5.6 (0x00007f78b60a5000) libvtkexoIIc.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkexoIIc.so.5.6 (0x00007f78b5f60000) libvtkNetCDF.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkNetCDF.so.5.6 (0x00007f78b5e26000) libvtkVolumeRendering.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkVolumeRendering.so.5.6 (0x00007f78b5775000) libvtkRendering.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkRendering.so.5.6 (0x00007f78b5162000) libvtkftgl.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkftgl.so.5.6 (0x00007f78b5057000) libvtkWidgets.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkWidgets.so.5.6 (0x00007f78b4d5f000) libvtkHybrid.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkHybrid.so.5.6 (0x00007f78b4977000) libvtkIO.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkIO.so.5.6 (0x00007f78b4342000) libvtkDICOMParser.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkDICOMParser.so.5.6 (0x00007f78b4225000) libX11.so.6 => /lib64/libX11.so.6 (0x00007f78b3ee7000) librt.so.1 => /lib64/librt.so.1 (0x00007f78b3cdf000) libz.so.1 => /lib64/libz.so.1 (0x00007f78b3ac8000) libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007f78b3892000) libdl.so.2 => /lib64/libdl.so.2 (0x00007f78b368e000) libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f78b3470000) libstdc++.so.6 => /lib64/libstdc++.so.6 (0x00007f78b30e9000) libm.so.6 => /lib64/libm.so.6 (0x00007f78b2d9e000) libgomp.so.1 => /lib64/libgomp.so.1 (0x00007f78b2b6f000) libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f78b2958000) libc.so.6 => /lib64/libc.so.6 (0x00007f78b25a2000) libXi.so.6 => /lib64/libXi.so.6 (0x00007f78b2391000) libXrender.so.1 => /lib64/libXrender.so.1 (0x00007f78b2187000) libXrandr.so.2 => /lib64/libXrandr.so.2 (0x00007f78b1f7c000) libXfixes.so.3 => /lib64/libXfixes.so.3 (0x00007f78b1d76000) libXcursor.so.1 => /lib64/libXcursor.so.1 (0x00007f78b1b6b000) libXinerama.so.1 => /lib64/libXinerama.so.1 (0x00007f78b1968000) libfontconfig.so.1 => /lib64/libfontconfig.so.1 (0x00007f78b1723000) libgthread-2.0.so.0 => /lib64/libgthread-2.0.so.0 (0x00007f78b1521000) libglib-2.0.so.0 => /lib64/libglib-2.0.so.0 (0x00007f78b120d000) libpng16.so.16 => /lib64/libpng16.so.16 (0x00007f78b0fda000) libgobject-2.0.so.0 => /lib64/libgobject-2.0.so.0 (0x00007f78b0d87000) libSM.so.6 => /lib64/libSM.so.6 (0x00007f78b0b7f000) libICE.so.6 => /lib64/libICE.so.6 (0x00007f78b0963000) /lib64/ld-linux-x86-64.so.2 (0x00007f78ba223000) libGLX.so.0 => /lib64/libGLX.so.0 (0x00007f78b0731000) libGLdispatch.so.0 => /lib64/libGLdispatch.so.0 (0x00007f78b047b000) libbz2.so.1 => /lib64/libbz2.so.1 (0x00007f78b026a000) libXt.so.6 => /lib64/libXt.so.6 (0x00007f78b0002000) libXss.so.1 => /lib64/libXss.so.1 (0x00007f78afdfe000) libXft.so.2 => /lib64/libXft.so.2 (0x00007f78afbe7000) libjpeg.so.62 => /lib64/libjpeg.so.62 (0x00007f78af97f000) libxcb.so.1 => /lib64/libxcb.so.1 (0x00007f78af757000) libfreebl3.so => /lib64/libfreebl3.so (0x00007f78af554000) libexpat.so.1 => /lib64/libexpat.so.1 (0x00007f78af322000) libpcre.so.1 => /lib64/libpcre.so.1 (0x00007f78af0af000) libffi.so.6 => /lib64/libffi.so.6 (0x00007f78aeea7000) libuuid.so.1 => /lib64/libuuid.so.1 (0x00007f78aeca2000) libXau.so.6 => /lib64/libXau.so.6 (0x00007f78aea9e000) I have Fedora 27. Knut Jørgen ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Knut J Bjuland <knutjor...@outlook.com> Sent: Tuesday, March 6, 2018 10:21 PM To: Freesurfer support list Subject: [Freesurfer] freeview. crash with undefined symbol: _ZN6QMutex12lockInternalEv when I choose colormap lookup table Dear Freesurfer export, When I chose colormap to lookup table with bert/mri/aseg.mgz freeview crash with the following message. [New Thread 0x7fffce7f4700 (LWP 78012)] /usr/local/freesurfer60/bin/freeview.bin: symbol lookup error: /usr/local/freesurfer60/bin/freeview.bin: undefined symbol: _ZN6QMutex12lockInternalEv [Thread 0x7fffce7f4700 (LWP 78012) exited] [Thread 0x7fffe219d700 (LWP 77903) exited] [Inferior 1 (process 77899) exited with code 0177] Missing separate debuginfos, use: dnf debuginfo-install libXcursor-1.1.15-1.fc27.x86_64 libcrypt-nss-2.26-26.fc27.x86_64 libgcc-7.3.1-5.fc27.x86_64 libgomp-7.3.1-5.fc27.x86_64 libstdc++-7.3.1-5.fc27.x86_64 pcre-8.41-6.fc27.x86_64 sssd-client-1.16.0-8.fc27.x86_64 Whatcan I do to walkaround this error. I also did ldd /usr/local/freesurfer/bin/freeview.bin ldd /usr/local/freesurfer/bin/freeview.bin linux-vdso.so.1 (0x00007ffe435fe000) libQtScriptTools.so.4 => /usr/local/freesurfer/lib/qt/lib/libQtScriptTools.so.4 (0x00007f5d6dbc9000) libQtScript.so.4 => /usr/local/freesurfer/lib/qt/lib/libQtScript.so.4 (0x00007f5d6d7aa000) libQtOpenGL.so.4 => /usr/local/freesurfer/lib/qt/lib/libQtOpenGL.so.4 (0x00007f5d6d58c000) libQtGui.so.4 => /usr/local/freesurfer/lib/qt/lib/libQtGui.so.4 (0x00007f5d6c7da000) libQtCore.so.4 => /usr/local/freesurfer/lib/qt/lib/libQtCore.so.4 (0x00007f5d6c3d5000) libGL.so.1 => /lib64/libGL.so.1 (0x00007f5d6c149000) libXext.so.6 => /lib64/libXext.so.6 (0x00007f5d6bf37000) libvtkverdict.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkverdict.so.5.6 (0x00007f5d6de8d000) libvtkGraphics.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkGraphics.so.5.6 (0x00007f5d6b6cd000) libfreetype.so.6 => /lib64/libfreetype.so.6 (0x00007f5d6b418000) libvtkmetaio.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkmetaio.so.5.6 (0x00007f5d6b290000) libvtkpng.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkpng.so.5.6 (0x00007f5d6b16c000) libvtkzlib.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkzlib.so.5.6 (0x00007f5d6b058000) libvtksqlite.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtksqlite.so.5.6 (0x00007f5d6aeb3000) libvtkImaging.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkImaging.so.5.6 (0x00007f5d6aa2e000) libvtkFiltering.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkFiltering.so.5.6 (0x00007f5d6a59c000) libvtkCommon.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkCommon.so.5.6 (0x00007f5d6a1a7000) libvtksys.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtksys.so.5.6 (0x00007f5d6a067000) libvtkGenericFiltering.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkGenericFiltering.so.5.6 (0x00007f5d69f2b000) libvtkexoIIc.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkexoIIc.so.5.6 (0x00007f5d69de6000) libvtkNetCDF.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkNetCDF.so.5.6 (0x00007f5d69cac000) libvtkVolumeRendering.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkVolumeRendering.so.5.6 (0x00007f5d695fb000) libvtkRendering.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkRendering.so.5.6 (0x00007f5d68fe8000) libvtkftgl.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkftgl.so.5.6 (0x00007f5d68edd000) libvtkWidgets.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkWidgets.so.5.6 (0x00007f5d68be5000) libvtkHybrid.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkHybrid.so.5.6 (0x00007f5d687fd000) libvtkIO.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkIO.so.5.6 (0x00007f5d681c8000) libvtkDICOMParser.so.5.6 => /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkDICOMParser.so.5.6 (0x00007f5d680ab000) libX11.so.6 => /lib64/libX11.so.6 (0x00007f5d67d6d000) librt.so.1 => /lib64/librt.so.1 (0x00007f5d67b65000) libz.so.1 => /lib64/libz.so.1 (0x00007f5d6794e000) libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007f5d67718000) libdl.so.2 => /lib64/libdl.so.2 (0x00007f5d67514000) libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f5d672f5000) libstdc++.so.6 => /lib64/libstdc++.so.6 (0x00007f5d66f6e000) libm.so.6 => /lib64/libm.so.6 (0x00007f5d66c19000) libgomp.so.1 => /lib64/libgomp.so.1 (0x00007f5d669ea000) libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f5d667d3000) libc.so.6 => /lib64/libc.so.6 (0x00007f5d663f0000) libXrender.so.1 => /lib64/libXrender.so.1 (0x00007f5d661e6000) libfontconfig.so.1 => /lib64/libfontconfig.so.1 (0x00007f5d65fa1000) libgthread-2.0.so.0 => /lib64/libgthread-2.0.so.0 (0x00007f5d65d9f000) libglib-2.0.so.0 => /lib64/libglib-2.0.so.0 (0x00007f5d65a8b000) libpng12.so.0 => /lib64/libpng12.so.0 (0x00007f5d65865000) libSM.so.6 => /lib64/libSM.so.6 (0x00007f5d6565d000) libICE.so.6 => /lib64/libICE.so.6 (0x00007f5d65441000) libGLX.so.0 => /lib64/libGLX.so.0 (0x00007f5d6520f000) libGLdispatch.so.0 => /lib64/libGLdispatch.so.0 (0x00007f5d64f59000) libbz2.so.1 => /lib64/libbz2.so.1 (0x00007f5d64d48000) libpng16.so.16 => /lib64/libpng16.so.16 (0x00007f5d64b15000) libXt.so.6 => /lib64/libXt.so.6 (0x00007f5d648ad000) libXss.so.1 => /lib64/libXss.so.1 (0x00007f5d646a9000) libXft.so.2 => /lib64/libXft.so.2 (0x00007f5d64492000) libjpeg.so.62 => /lib64/libjpeg.so.62 (0x00007f5d6422a000) libxcb.so.1 => /lib64/libxcb.so.1 (0x00007f5d64002000) libfreebl3.so => /lib64/libfreebl3.so (0x00007f5d63dff000) /lib64/ld-linux-x86-64.so.2 (0x00007f5d6dddc000) libexpat.so.1 => /lib64/libexpat.so.1 (0x00007f5d63bcd000) libpcre.so.1 => /lib64/libpcre.so.1 (0x00007f5d6395a000) libuuid.so.1 => /lib64/libuuid.so.1 (0x00007f5d63755000) libXau.so.6 => /lib64/libXau.so.6 (0x00007f5d63551000) Best regards Knut Jørgen
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