Sorry, that is not a complete list. I should include putamen and
pallidum. This has been fixed on the wiki page
On 3/16/18 11:59 AM, Douglas Greve wrote:
On 3/15/18 9:59 PM, prasser wrote:
Hi,
From https://surfer.nmr.mgh.harvard.edu/fswiki/MorphometryStats
*"SubCortGray* - includes thalamus, caudate, hippocampus, amygdala,
accumbens, ventral DC, substancia nigra (if there). This is a simple
voxel count of structures identified as subcortical GM."
Could you please let me know if "thalamus, caudate, hippocampus,
amygdala, accumbens, ventral DC, substancia nigra (if there)" is the
complete list of structures identified as subcortical GM or are there
others?
That is a complete list
A simple voxel count of thalamus, caudate, hippocampus, amygdala,
accumbens, ventral DC, substancia nigra (if there) does not seem to
match the subcortgray value from aseg.stats.
The values in aseg.stats are not a simple voxel count -- they include
partial volume correction.
Versions 5.3, 6.0.
Thanks.
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