Dear FreeSurfer experts,
I have a problem with mri_glmfit.
I am using the following script:
mri_glmfit \
--y lh.AspergerStudy.thickness.10.mgh \
--fsgd FSGD/AspergerStudy.fsgd dods \
--C Contrasts/AS-HC.mtx \
--C Contrasts/HC-AS.mtx \
--surf fsaverage lh \
--cortex \
--glmdir lh.thickness.AspergerStudy.10.glmdir
But when I run it, I obtain an error:
acad1215inv:01_freesurfer_processing acad1215inv$ mri_glmfit \
> --y lh.AspergerStudy.thickness.10.mgh \
> --fsgd FSGD/AspergerStudy.fsgd dods \
> --C Contrasts/AS-HC.mtx \
gdfRead(): reading FSGD/AspergerStudy.fsgd
INFO: gd2mtx_method is dods
ERROR: must specify GLM output dir
acad1215inv:01_freesurfer_processing acad1215inv$ --C Contrasts/HC-AS.mtx \
> --surface fsaverage lh \
> --cortex \
> --glmdir lh.thickness.AspergerStudy.10.glmdir
-bash: --C: command not found
What could I do for solving this problem?
Thanks a lot
Naiara
--
*Naiara Aguirre Vidal*
Neuropsychology and Functional Neuroimaging group
Department of Basic and Clinical Psychology and Psychobiology
Jaume I University
Edificio de Investigación II, Avda. Sos Baynat, s/n
E-12071 Castellón de la Plana (Spain)
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