Hi, I have been trying to edit structural brains and very few times I would get the following error while running recon-all -s subjID
white matter peak found at 110 cannot allocate memory Upon looking at the archive, there was only one similar issue and it was recommend to check mri_info as the brain mask might have been corrupted. I did that and here is the output: Volume information for brainmask.mgz type: MGH dimensions: 256 x 256 x 256 voxel sizes: 1.000000, 1.000000, 1.000000 type: UCHAR (0) fov: 256.000 dof: 0 xstart: -128.0, xend: 128.0 ystart: -128.0, yend: 128.0 zstart: -128.0, zend: 128.0 TR: 0.00 msec, TE: 0.00 msec, TI: 0.00 msec, flip angle: 0.00 degrees nframes: 1 PhEncDir: UNKNOWN FieldStrength: 0.000000 ras xform present xform info: x_r = -1.0000, y_r = 0.0000, z_r = 0.0000, c_r = -1.0000 : x_a = 0.0000, y_a = 0.0000, z_a = 1.0000, c_a = 37.5000 : x_s = 0.0000, y_s = -1.0000, z_s = 0.0000, c_s = 4.7185 talairach xfm : /pine/scr/s/r/srishtig/Duke_Test/Freesurfer_out/11039/mri/transforms/talairach.xfm Orientation : LIA Primary Slice Direction: coronal voxel to ras transform: -1.0000 0.0000 0.0000 127.0000 0.0000 0.0000 1.0000 -90.5000 0.0000 -1.0000 0.0000 132.7185 0.0000 0.0000 0.0000 1.0000 voxel-to-ras determinant -1 ras to voxel transform: -1.0000 -0.0000 -0.0000 127.0000 -0.0000 -0.0000 -1.0000 132.7185 -0.0000 1.0000 -0.0000 90.5000 -0.0000 -0.0000 -0.0000 1.0000 Is there any other way to resolve this issue than reconstruction the brain again and doing all the edits all over again hoping that the brain mask does not get corrupted this time? Appreciate any help with this. Best, Srishti
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.