When I type this command: tkregisterfv --mov negative_allsocial_proportion.nii --regheader --s mni152_subject --surfs --reg reg.deleteme.dat
It gives me the error: cannot find mni152_subject. Although I clearly checked that the directory from which I am submitting this command has the mni152_subject directory within which there are all the other required directories such as: mri, stats, surf, scripts, etc. I am unsure what is happening here. Best, Srishti Social/Clinical Research Specialist Child Imaging Research and Life Experiences Lab University of North Carolina at Chapel Hill email (W): srish...@email.unc.edu skype: srishti.goel12 On Thu, Apr 5, 2018 at 12:49 PM, Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > Those commands look ok. My suspicion goes to the use of --regheader. See > whether the registration is ok with > > tkregisterfv --mov negative_allsocial_proportion.nii --regheader --s > mni152_subject --surfs --reg reg.deleteme.dat > > > On 04/05/2018 08:34 AM, srishti goel wrote: > > Hi, > > > > I am trying to compare my volume maps > > (negative_allsocial_proportion.nii) to someone else's > > (SN_like_cortical_lh.nii.gz) who have it on a surface > > (mni152_subject). So I used the steps for mri_vol2surf command as > > follows: > > > > Commands: > > mri_vol2surf --src negative_allsocial_proportion.nii --regheader > > mni152_subject --hemi lh --o ./neg_allsocial_lh.nii --projfrac 0.5 > > Then to view it: > > tksurfer mni152_subject lh inflated -overlay ./neg_allsocial_lh.nii > > -overlay SN_like_cortical_lh.nii.gz -fthresh 0.5 > > > > Everything ran fine and we didn't get any error but then while viewing > > the files we could not see our map (neg_allsocail_lh.nii) on the > > surface. This file seemed to work fine as it is not an empty file when > > I checked the file size. However, when we view it using tksurfer it > > does not show up as a highlighted portion on the surface. The > > SN_like_cortical_lh.nii.gz file shows up just fine. > > > > Could someone please help me figure out what might have gone wrong here. > > > > Thanks so much! > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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