Hi Anna, Unfortunately, we’re not able to build the dev code right now due to a compile error, but this should get sorted out within the next day or two, so I can help you out with getting this new mri_normalize then
best Andrew From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Anna Daniels <anna.dani...@fu-berlin.de> Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edu> Date: Monday, April 9, 2018 at 1:10 PM To: FS Help <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] recon-all: exited with errors (white matter peak at 110, cannot allocate memory) Hi Bruce, thank you for the quick reply! Ubuntu 16.04 LTS 64-bit freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Please let me know how to incorporate the new version into the installation. Thank you very much and best, Anna Hi Anna no attachments :< Srishti's issue stemmed from control points outside of the head. The current (dev) version of mri_normalize detects and removes them. Can you grab a new version of mri_normalize and see if it fixes your problem? Let us know your hardware/software environment and we will get it to you cheers Bruce On Fri, 6 Apr 2018, Anna Daniels wrote: > Hi Bruce, hi Srishti, > > I have exactly the same problem with several subjects rerunning recon-all > and there was sufficient memory available. I also tried out the last command > directly which resulted in the same error log. > > ?mri_normalize > -f/home/anna/FREESURFER/00_DATA_MABT1T2/02a_MABT1T2_cross_edits_transfer/rrer > uncrosstest_cp17/22275_T1_fs_edit/tmp/control.dat -mprage -aseg > aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz > > Attached you can find the input file. > > Thank you and best, > Anna?[icon_10_generic_list.png] ?22275_T1_fs_edit.zip[IMAGE]
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