Dear Douglas,
Thank you for your reply. I run “mri_fdr –help” to get docs that include some information for how to use this command. However, I still don’t know how FDR was used to correct for multiple comparisons. This question is an opinion given by one reviewer, and I really don’t know how to reply. For the description "To correct for multiple comparisons, the thresholds of the P maps were set to yield an expected false discovery rate (FDR) of 0.05." The reviewer said “Would help to provide more details as to how FDR was used to correct for multiple?” Would you please give me some help to response the question? Thank you very much. Kind regards, Livia 2018-04-17 0:40 GMT+08:00 Douglas N. Greve <dgr...@mgh.harvard.edu>: > You can also use mri_fdr Run it with --help to get docs > > > On 04/16/2018 10:23 AM, Livia Liu wrote: > > > > Dear FS experts, > > > > I'd like to know that how FDR was used to correct for multiple > > comparisons. I do FDR correction in two way in FreeSurfer. > > > > 1, Do the FDR correction in the qdec tool. And the page of “False > > Discovery Rate” in the page “Multiple-Comparisons Correction in Qdec” > > was lost. > > > > 2, Use “lme_mass_FDR.m” to do the FDR correction in LME model, which > > was based on Tom's FDR.m in the github, however the page was also lost. > > > > Would help to provide more details as to how FDR in the two way was > > used to correct for multiple comparisons? > > > > > > Thank you very much, and looking forward to reply. > > > > Kind regards, > > > > Livia > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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