Hi Andrew, FreeSurfer is being sourced automatically each time I open the terminal, and I see the usual lines:
Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /home/lisak/Desktop/freesurfer FSFAST_HOME /home/lisak/Desktop/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /home/lisak/Desktop/freesurfer/subjects MNI_DIR /home/lisak/Desktop/freesurfer/mni FSL_DIR /home/lisak/Desktop/fsl The outputs of which freeview and which freeview.bin are, respectively: # 1. /home/lisak/Desktop/freesurfer/bin/freeview 2. /home/lisak/Desktop/freesurfer/bin/freeview.bin These are actual locations of the file, so all seems good until that point. I typed "freeview" again, after doing the "which freeview" commands, and I got the "freeview.bin: Command not found." again. Any further suggestions are appreciated! Thanks in advance, Darko On Tue, Apr 17, 2018 at 5:28 PM, Hoopes, Andrew <[email protected]> wrote: > Hi Darko, how are you sourcing freesurfer? And what is the output of > running “which freeview” and “which freeview.bin”? > > > > best, > > Andrew > > > > *From: *<[email protected]> on behalf of Darko > Komnenić <[email protected]> > *Reply-To: *FS Help <[email protected]> > *Date: *Tuesday, April 17, 2018 at 11:17 AM > *To: *FS Help <[email protected]> > *Subject: *[Freesurfer] unable to open freeview > > > > Dear experts, > > I encountered a problem when trying to open freeview. I am using > FreeSurfer v.5.3.0-HCP, and after sourcing it, I tried typing simply > freeview in the terminal, as described in this link: > http://freesurfer.net/fswiki/FreeviewGuide/FreeviewGeneralUsage/ > FreeviewQuickStart > > but the feedback I get is: freeview.bin: Command not found. > > Am I missing something? When searching for freeview on my computer, > "freesurfer" and "freesurfer.bin" appear in my bin subfolder, but for some > reason they seem not to be recognized. > > Any help is appreciated! > > Best, > > Darko > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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