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Thanks Bruce. Will the orig.mgz file be different from the raw data in 
any significant way?

Thanks again,
Colleen

-------- Original Message --------
Subject: orig.mgz versus T1.mgz
Date: 2018-04-30 11:54
 From: "C.P.E. Rollins" <cp...@cam.ac.uk>
To: Freesurfer <freesurfer@nmr.mgh.harvard.edu>

Dear Freesurfer developers,

A collaborator shared with me Freesurfer outputs, but I would like to 
some analyses requiring the scans in NIFTI format. I understand 
mri_convert should do the trick for this, though I was wondering whether 
I should use "orig.mgz" or "T1.mgz" to convert back to the original T1 
NIFTI files.

Many thanks,
Colleen

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