External Email - Use Caution Hello Bruce,
Yes, i do want segmentation. But i am more interested in getting just white matter and grey matter in segmented brain. As the segmentation results also have left ventricles and right ventricles and other parts as well. I am more interested in just getting white matter + grey matter of brain. How can i get this ? Also, I looked at aparc+aseg.mgz, when i try to see 3D of it, using free-view. I see half brain in 3D. How can i see the 3D of segmented brain. Thanks, Ritesh Mahajan ----- Original Message ----- From: "Bruce Fischl" <[email protected]> To: "freesurfer" <[email protected]> Sent: Wednesday, May 30, 2018 7:26:37 PM Subject: Re: [Freesurfer] white matter and grey matter Hi Ritesh can you clarify what you mean? Do you want a segmentation? You can get that in the aparc+aseg.mgz at the end of the recon-all processing. cheers Bruce On Wed, 30 May 2018, Ritesh Mahajan wrote: > External Email - Use Caution > > Hello Team, > > 1) How can i just get the white matter and grey matter together? > 2) At what stage of free-surfer i can get this? > > I tried looking at the brainmask.mgz at the end of recon-all -autorecon1 > stage. But, it looks like it has CSF and other parts of brain as well. > > Can you please help me out with this? > > Thanks, > Ritesh Mahajan > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
