External Email - Use Caution Sorry I wasn't clear. Yes, I would like to see it with all the non-STV removed, in order to see exactly what the supratentorial segmentation is including. So creating a mask would be ideal. Is there a match # for supratentorialvol and supratentorialvolnotvent to use in mri_binarize? I don't see one on this table https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/AnatomicalROI/FreeSurferColorLUT
On Wed, May 30, 2018 at 12:59 PM, Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > I'm not sure what you mean. You can just use freeview to load the aseg. > Or do you want all the non-STV removed? If that, you can create a mask > of STV using mri_binarize and --match run on the aseg.mgz, then use > mri_mask aseg.mgz stvmask.mgz aseg-stvonly.mgz > > > > On 05/30/2018 11:56 AM, James Gullickson wrote: > > > > > > All, > > > > Is there any way to graphically visualize the segmentations for > > SupraTentorialVol and SupraTentorialVolNotVent, for example in > > freeview or tkmedit? Based on the descriptions I have read for the > > supratentorial values, I want to use them for an analysis. However, I > > would like to visualize them in my data set for QA purposes to ensure > > they are capturing what I think they are capturing. > > > > Thanks, > > > > James > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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