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Here is an exempt from the terminal from one of the subjects. This is how it ended: #@# Curv .H and .K lh Tue Jun 5 16:06:08 DST 2018 /mnt/d/Freesurfer_CTE/1062_2/surf mris_curvature -w lh.white.preaparc total integrated curvature = 5.493*4pi (69.027) --> -4 handles ICI = 150.0, FI = 1629.4, variation=25419.408 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H ln: failed to create symbolic link 'lh.white.H': Operation not permitted Linux Laptop 4.4.0-43-Microsoft #1-Microsoft Wed Dec 31 14:42:53 PST 2014 x86_64 x86_64 x86_64 GNU/Linux recon-all -s 1062_2 exited with ERRORS at Tue Jun 5 16:06:13 DST 2018 Thank you! Anna ________________________________ From: [email protected] <[email protected]> on behalf of Douglas N. Greve <[email protected]> Sent: Monday, June 4, 2018 6:11:33 PM To: [email protected] Subject: Re: [Freesurfer] Recon-all exited with errors It is not clear what the actual error is. Is there anything that gets printed out to the terminal that is not in the log? Also, can you verify that the disk is not filling up? On 06/04/2018 04:53 PM, Hanna Vasilevskaya wrote: > > > Good afternoon all, > > > I am new to Freesurfer (using version 6.0) and trying to run recon-all > on multiple subjects. Every subject exited with errors. Specifically, > a number of surfaces are missing from the "surf" subject's folder > (only 30 files instead of 80). Would you happen to know how to fix it? > > > Taken from the recon-all status log: > > #@# Smooth2 lh Mon Jun 4 16:26:27 DST 2018 > #@# Smooth2 rh Mon Jun 4 16:26:31 DST 2018 > #@# Inflation2 lh Mon Jun 4 16:26:35 DST 2018 > #@# Inflation2 rh Mon Jun 4 16:27:02 DST 2018 > #@# Curv .H and .K lh Mon Jun 4 16:27:29 DST 2018 > Linux Laptop 4.4.0-43-Microsoft #1-Microsoft Wed Dec 31 14:42:53 PST > 2014 x86_64 x86_64 x86_64 GNU/Linux > recon-all -s 1062_2 exited with ERRORS at Mon Jun 4 16:27:32 DST 2018 > > I have also attached a recon-all.log for your convenience. > > Thank you, > Anna > > > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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