Hi David
the -3T flag changes the target atlas to one built from 3T data, and also
modifies some of the parameters that are passed to nu_correct, I believe
to make it a bit more aggressive. I think the parameters we use are the
ones suggested here:
https://www.ncbi.nlm.nih.gov/pubmed/19732839
cheers
Bruce
On Fri, 29 Jun 2018, David S Lee wrote:
External Email - Use Caution
Hello Experts,
I believe -3T Flag can be used with "recon-all" on scans collected by 3T
scanners. I believe
it performs intensity normalization to set white matter intensity threshold at
110. I am
hoping to learn more about the flag option as it produces slightly better
output for me.
Would you be able to guide me to a documentation on this -3T flag?
Thank you!
--
David S. Lee
Associate Research Specialist
Center for Healthy Minds
University of Wisconsin - Madison
(608) 890-1115
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
