External Email - Use Caution Hi Bruce,
I sent all the material to Leah. You are right about the normalization being a control point finding tool. But in the temporal cortex or inferior frontal where the WM is really thin or there is movement corruption this can cause the wm voxels to be too dark after normalization. The aseg tends to be correct however, so the control points basically go into locations where the aseg is WM but the surfaces segment as GM. I'll put the github location so anyone can evaluate it https://github.com/DevelopmentalImagingMCRI/freesurfer_cp_tool From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Bruce Fischl Sent: Saturday, 30 June 2018 12:21 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Proposed addition for Freesurfer - automated control points Hi Chris can you elaborate a bit? Our intensity normalization is almost entirely an automated control point finding tool. cheers Bruce On Fri, 29 Jun 2018, Chris Adamson wrote: > > External Email - Use Caution > > Freesurfer devs, > > > > I presented an automated control point adding tool at HBM and a few > freesurfer lab people > came over and had a look. I was wondering if someone would like to review it > for either > inclusion or to perhaps reference from the wiki as a tool for people to use > if they choose? > > > > Thanks in advance, > > > > Chris. > > > > Dr Chris Adamson > > Senior Research Officer > > Developmental Imaging, Clinical Sciences > > > > Murdoch Childrens Research Institute > > The Royal Children's Hospital > > Flemington Road, Parkville, VIC 3052 Australia > > E chris.adam...@mcri.edu.au<mailto:chris.adam...@mcri.edu.au> > > www.mcri.edu.au<http://www.mcri.edu.au> > > > > > > This e-mail and any attachments to it (the "Communication") are, unless > otherwise stated, > confidential, may contain copyright material and is for the use only of the > intended > recipient. If you receive the Communication in error, please notify the > sender immediately by > return e-mail, delete the Communication and the return e-mail, and do not > read, copy, > retransmit or otherwise deal with it. Any views expressed in the > Communication are those of > the individual sender only, unless expressly stated to be those of Murdoch > Childrens Research > Institute (MCRI) ABN 21 006 566 972 or any of its related entities. MCRI does > not accept > liability in connection with the integrity of or errors in the Communication, > computer virus, > data corruption, interference or delay arising from or in respect of the > Communication. > > > > P Please consider the environment before printing this email > > > > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
