External Email - Use Caution        

Dear Sir,

Thanks for your reply Yes,i have run 6.0, Can you send me the link for
developmental version of freesurfer, also how can i obtain posterior
regions of subfields like CA1,CA2,CA3,CA4, as the link suggests only CA1
head and CA1 body were segmented , i need posterior part of CA1 can i
assume CA1 body as posterior region.


Thanks
Vasudev

On Mon, Jul 2, 2018 at 8:25 PM, Iglesias Gonzalez, Eugenio <
e.igles...@ucl.ac.uk> wrote:

> Ah, now I understand.
>
> To get the division in the wiki (https://surfer.nmr.mgh.
> harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala), you need to
> run the development version of FreeSurfer. The version you ran (6.0, I
> presume), does not provide such subdivision.
>
> In principle, you could use Garikoitz’s code to subdivide the
> segmentation, but his code is not part of FreeSurfer, so you would have to
> contact him for support. Alternatively, you can also download the
> development version of FreeSurfer, which will provide the segmentation that
> I mentioned earlier.
>
> Kind regards,
>
> /Eugenio
>
>
>
> --
>
> Juan Eugenio Iglesias
>
> ERC Senior Research Fellow
>
> Centre for Medical Image Computing (CMIC)
>
> University College London
>
> http://www.jeiglesias.com
>
> http://cmictig.cs.ucl.ac.uk/
>
>
>
>
>
> *From: *Dev vasu <vasudevamurthy.devulapa...@gmail.com>
> *Date: *Monday, 2 July 2018 at 19:22
> *To: *"Iglesias Gonzalez, Eugenio" <e.igles...@ucl.ac.uk>
> *Cc: *"freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>, "
> igles...@nmr.mgh.harvard.edu" <igles...@nmr.mgh.harvard.edu>
> *Subject: *Re: Anterior / Posterior Partition in Hippocampus parcellation
> atlas
>
>
>
> Dear sir,
>
>
>
> In the following journal published by you ,procedure for longitudinal
> segmentation was highlighted (https://github.com/garikoitz/hippovol) , I
> have run the module described in wiki and i have obtained
> lh.hippoSfLabels-T1.v10.FSvoxelSpace.mgz and lh.hippoSfLabels-T1.v10.mgz
> files , i would like to know how i can split the labels CA1 head, CA1 body
> and CA1 tail from this file, since individual subfield label numbers for
> CA1 head and CA1 body are not defined ,also can i assure CA1 body as
> posterior region and CA1 head as anterior ?.
>
>
>
>
>
> Thanks
>
> Vasudev
>
>
>
> On Mon, Jul 2, 2018 at 7:39 PM, Iglesias Gonzalez, Eugenio <
> e.igles...@ucl.ac.uk> wrote:
>
> Dear Vasudev,
>
> You can run the module described in that wiki page, and in the output file
> [lr]h.hippoAmygLabels-T1.v2x.mgz you will find segmentations for CA1
> head, CA1 body, CA23 head, CA23 body, CA4 head, CA4 body, and hippocampal
> tail (note that we don’t parcellate the tail).
>
> Cheers,
>
> /Eugenio
>
>
>
> --
>
> Juan Eugenio Iglesias
>
> ERC Senior Research Fellow
>
> Centre for Medical Image Computing (CMIC)
>
> University College London
>
> http://www.jeiglesias.com
>
> http://cmictig.cs.ucl.ac.uk/
>
>
>
>
>
> *From: *Dev vasu <vasudevamurthy.devulapa...@gmail.com>
> *Date: *Monday, 2 July 2018 at 17:09
> *To: *"freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>, "
> igles...@nmr.mgh.harvard.edu" <igles...@nmr.mgh.harvard.edu>
> *Subject: *Anterior / Posterior Partition in Hippocampus parcellation
> atlas
>
>
>
> *        External Email - Use Caution        *
>
> Dear Sir,
>
>
>
>
>
> I have reviewed your journal which detailed about hippocampus parcellation
> ( https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiO
> fAmygdala ) of subfields ( HBT - Head/body/Tail) , could you please let
> me know how to partition the atlas along the lines of Anterior CA1,CA3,CA4
> and posterior CA1,CA3,CA4.
>
>
>
>
>
> Thanks
>
> Vasdudev
>
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