External Email - Use Caution Dear Sir,
Thanks for your reply Yes,i have run 6.0, Can you send me the link for developmental version of freesurfer, also how can i obtain posterior regions of subfields like CA1,CA2,CA3,CA4, as the link suggests only CA1 head and CA1 body were segmented , i need posterior part of CA1 can i assume CA1 body as posterior region. Thanks Vasudev On Mon, Jul 2, 2018 at 8:25 PM, Iglesias Gonzalez, Eugenio < e.igles...@ucl.ac.uk> wrote: > Ah, now I understand. > > To get the division in the wiki (https://surfer.nmr.mgh. > harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala), you need to > run the development version of FreeSurfer. The version you ran (6.0, I > presume), does not provide such subdivision. > > In principle, you could use Garikoitz’s code to subdivide the > segmentation, but his code is not part of FreeSurfer, so you would have to > contact him for support. Alternatively, you can also download the > development version of FreeSurfer, which will provide the segmentation that > I mentioned earlier. > > Kind regards, > > /Eugenio > > > > -- > > Juan Eugenio Iglesias > > ERC Senior Research Fellow > > Centre for Medical Image Computing (CMIC) > > University College London > > http://www.jeiglesias.com > > http://cmictig.cs.ucl.ac.uk/ > > > > > > *From: *Dev vasu <vasudevamurthy.devulapa...@gmail.com> > *Date: *Monday, 2 July 2018 at 19:22 > *To: *"Iglesias Gonzalez, Eugenio" <e.igles...@ucl.ac.uk> > *Cc: *"freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>, " > igles...@nmr.mgh.harvard.edu" <igles...@nmr.mgh.harvard.edu> > *Subject: *Re: Anterior / Posterior Partition in Hippocampus parcellation > atlas > > > > Dear sir, > > > > In the following journal published by you ,procedure for longitudinal > segmentation was highlighted (https://github.com/garikoitz/hippovol) , I > have run the module described in wiki and i have obtained > lh.hippoSfLabels-T1.v10.FSvoxelSpace.mgz and lh.hippoSfLabels-T1.v10.mgz > files , i would like to know how i can split the labels CA1 head, CA1 body > and CA1 tail from this file, since individual subfield label numbers for > CA1 head and CA1 body are not defined ,also can i assure CA1 body as > posterior region and CA1 head as anterior ?. > > > > > > Thanks > > Vasudev > > > > On Mon, Jul 2, 2018 at 7:39 PM, Iglesias Gonzalez, Eugenio < > e.igles...@ucl.ac.uk> wrote: > > Dear Vasudev, > > You can run the module described in that wiki page, and in the output file > [lr]h.hippoAmygLabels-T1.v2x.mgz you will find segmentations for CA1 > head, CA1 body, CA23 head, CA23 body, CA4 head, CA4 body, and hippocampal > tail (note that we don’t parcellate the tail). > > Cheers, > > /Eugenio > > > > -- > > Juan Eugenio Iglesias > > ERC Senior Research Fellow > > Centre for Medical Image Computing (CMIC) > > University College London > > http://www.jeiglesias.com > > http://cmictig.cs.ucl.ac.uk/ > > > > > > *From: *Dev vasu <vasudevamurthy.devulapa...@gmail.com> > *Date: *Monday, 2 July 2018 at 17:09 > *To: *"freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>, " > igles...@nmr.mgh.harvard.edu" <igles...@nmr.mgh.harvard.edu> > *Subject: *Anterior / Posterior Partition in Hippocampus parcellation > atlas > > > > * External Email - Use Caution * > > Dear Sir, > > > > > > I have reviewed your journal which detailed about hippocampus parcellation > ( https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiO > fAmygdala ) of subfields ( HBT - Head/body/Tail) , could you please let > me know how to partition the atlas along the lines of Anterior CA1,CA3,CA4 > and posterior CA1,CA3,CA4. > > > > > > Thanks > > Vasdudev > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > >
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