Hi Konstantina
can you include the full command line, screen output and recon-all.log in
the type of email? Otherwise it will be difficult for us to help
thanks
Bruce
On Mon, 9 Jul 2018, Konstantina Skolariki wrote:
External Email - Use Caution
Hi Bruce,
I managed to overcome said error but now during example 2 another error pops
up.
Skol-MacBook-Pro:~ kskol$ export SUBJECTS_DIR=<path to subject directory>
-bash: syntax error near unexpected token `newline'
Thanks,
Konstantina
____________________________________________________________________________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of
Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Sent: 09 July 2018 17:17
To: Freesurfer support list
Subject: Re: [Freesurfer] niiWrite(): error opening file tmp.nii
Hi Konstantina
do you have write access to the partition you are putting the subjects_dir
on? And can you please send us the full command line, screen output and
recon-all.log?
cheers
Bruce
On Mon, 9 Jul 2018,
Konstantina Skolariki wrote:
>
> External Email - Use Caution
>
> Hi FreeSurfer Developers,
> I have downloaded freesurfer on my mac and after "setup & configuration” I
tried to perform
example
> 1 from "test your FreeSurfer Installation”. However when I type the command,
this error message
> shows up:
>
> $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
> reading from sample-001.mgz...
> TR=7.25, TE=3.22, TI=600.00, flip angle=7.00
> i_ras = (-0, -1, -0)
> j_ras = (-0, 0, -1)
> k_ras = (-1, 0, 0)
> writing to tmp.nii...
> niiWrite(): error opening file tmp.nii
> ERROR: failure writing tmp.nii
>
> Thanks,
> Konstantina
>
>
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