Hi John
so, you don't want to give recon-all multiple subjects. If you have
enough ram you should just call it once for each subject and not use the
openmp flag
cheers
Bruce
On Thu, 19 Jul 2018, John Absher wrote:
External Email - Use Caution
We are trying to run many subjects through recon-all in batches on an 8 core
Windows Server on which
we have virtualBox running CentOS7 and freesurfer 6.
Can you tell me if this command will utilize all 8 cores effectively to process
all 8 subjects
simultaneously?
recon-all -subjid TBI1_002 -i TBI1_002_v1.nii.gz \
-subjid TBI1_003 –i TBI1_003_v1.nii.gz \
-subjid TBI1_005 -i TBI1_005_v1.nii.gz \
-subjid TBI1_006 -i TBI1_006_v1.nii.gz \
-subjid TBI1_007 -i TBI1_007_v1.nii.gz \
-subjid TBI1_009 -i TBI1_009_v1.nii.gz \
-subjid TBI1_012 -i TBI1_012_v1.nii.gz \
-subjid TBI1_013 -i TBI1_013_v1.nii.gz \
-all -parallel -openmp 8
Thanks,
John
John R. Absher, MD, FAAN
GHS Neurosciences
jabs...@ghs.org
864-350-6655 (mobile)
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