External Email - Use Caution
Hi Eugenio,
Yes, If I run without the hippocampal subfield flag. Recon-all complete without
any error. So I am confused what is wrong with this.
Thank you
Shize
在 2018-08-24 00:02:32，"Iglesias Gonzalez, Eugenio" <e.igles...@ucl.ac.uk> 写道：
External Email - Use Caution
Hi Shize,
Does recon-all complete when you run it without the hippocampal subfield flag?
It doesn’t look like an error in the subfield module to me …
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Centre for Medical Image Computing (CMIC)
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of 姜时泽
<jiangshize1...@163.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, 23 August 2018 at 15:10
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] questions about hippocampus subfield error
External Email - Use Caution
|
|
Dear freesurfer experts,
I am trying to run recon-all with -hippocampal-subfields-T1 flag to get
hippocampal subfield information. I tried many times but always finish with
error. The MRI data is obtained from GE750 MRI machine. The resolution is
1mm*1mm*1mm.
below is the commands I used to run freesurfer and attached is the recon-all
log file.
recon-all SubJ01_ReoT1.nii -s SubJ01_ReoT13THip -hippocampal-subfields-T1
-brainstem-structures -3T -qcache -all
I am not sure if there are something wrong with my inputs.
Thank you all
all the best
Shize
--
Shize Jiang
Fudan University,
Department of neurosurgery, Huashan Hospital, Shanghai Medical College
Shanghai,200032,P.R.China
Mobile: (86)18317079839
E-Mail: sjian...@fudan.edu.cn
|
|
|
|
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
