Have you looked at aparc+aseg.mgz? You can change it to nii with
mri_convert aparc+aseg.mgz aparc+aseg.nii
On 8/27/18 5:54 AM, Maedeh Khalilian wrote:
External Email - Use Caution
Dear FreeSurfer experts,
I have used "mri_annnotation2label" and "mri_label2vol" to change the
parcellation output of FreeSurfer e.g the lh.aparc.annot into an
".nii" so i can see the parcels in Mricro.
Now I can see the parcels just on the cortex not on the whole graymatter.
The first question I have is that, is the parcellation done on the
whole graymatter?
And if yes, is there a way that I can see the volumes on the whole
graymatter, not just on the cortex?
I would be grateful if you could help me.
best regards,
Maedeh,
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
