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?Dear Doug:
I am trying to get a table containing pc1 values for each subject in a
longitudinal study and failed to extract this. I use the code below:
long_mris_slopes --qdec ./qdec/long.qdec.table.2.dat --meas thickness --hemi lh
--do-avg --do-rate --do-pc1 --do-spc --do-stack --do-label --time years
--qcache fsaverage --sd /Users/richardaviv/Desktop/Longitudinal_FS --out-pc1
out-pc1.dat
It says
long_mris_slopes: error: no such option: --out-pc1
However in the --help file it says:
Within-Subject Output:
Pass these to overwrite the default names:
--out-avg=OUT_AVG filename to store temporal average in
<template>/stats/<OUT_AVG> (default:
long.<stats>.<meas>-avg.dat)
--out-rate=OUT_RATE
filename to store rate in <template>/stats/<OUT_RATE>
(default: long.<stats>.<meas>-rate.dat)
--out-pc1fit=OUT_PC1FIT
filename to store pct. change (to tp1fit) in
<template>/stats/<OUT_PC1FIT> (default:
long.<stats>.<meas>-pc1fit.dat)
--out-pc1=OUT_PC1 filename to store pct. change (to tp1) in
<template>/stats/<OUT_PC1> (default:
long.<stats>.<meas>-pc1.dat)
--out-spc=OUT_SPC filename to store sym. pct. change in
<template>/stats/<OUT_SPC> (default:
long.<stats>.<meas>-spc.dat)
--out-resid=OUT_RESID
filename to store residual in
<template>/stats/<OUT_RESID> (default:
long.<stats>.<meas>-resid<resid>.dat), requires
--resid <int>
--out-stack=OUT_STACK
filename to store stacked measure file
<template>/stats/<OUT_STACK> (default:
long.<stats>.<meas>-stack.dat)
Stacked Tables:
To output tables with results from all subjects
--stack-avg=STACK_AVG
full filename to stack temporal average tables
(default no stacking)
--stack-rate=STACK_RATE
full filename to stack rate tables (default no
stacking)
--stack-pc1fit=STACK_PC1FIT
full filename to stack pct. change to tp1fit tables
(default no stacking)
--stack-pc1=STACK_PC1
full filename to stack pct. change to tp1 tables
(default no stacking)
--stack-spc=STACK_SPC
full filename to stack sym. pct. tables (default no
stacking)
--stack-resid=STACK_RESID
full filename to stack residual tables (default no
stacking)?
Am I writing the code wrong?? I never got any long.<stats>.<meas>-pc1.dat file
in <template>/stats/ folder except bunch of mgh files in <template>/surf/
folder.
Thanks,
Anwar
--
Anwar S. Shatil
Research Assistant
Department of Medical Imaging
Sunnybrook Health Sciences Centre
Room AB204, 2075 Bayview Avenue
Toronto, ON M4N 3M5
Tel: 416.480.6100 ext. 89617
Email: anwar.sha...@sunnybrook.ca
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