External Email - Use Caution These images were both opened in freeview. Should they be aligned differently?
-----Original Message----- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N. Greve Sent: Wednesday, September 12, 2018 2:15 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] /mri/orig/001.mgz vs T1.mgz depends a little bit on the viewer, but we resample into the scanner space, so it could look like it is tilted On 09/12/2018 12:33 PM, Alexopoulos, Dimitrios wrote: > > External Email - Use Caution > > I have a quick question as it relates to image outputs from freesurfer > 6.0 (i.e. /mri/orig/001.mgz vs. nu/T1.mgz). Images below: > > Left - /mri/orig/001.mgz > > Right - T1.mgz > > The outputs (segmentations/surfaces) look good, but I noticed the > output volumes (nu.mgz, T1.mgz, brainmask.mgz) looked tilted > > compared to the input image (/mri/orig/001.mgz) . Is this > expected/possible? > > Jim > > ---------------------------------------------------------------------- > -- > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If > you are not the intended recipient, be advised that any unauthorized > use, disclosure, copying or the taking of any action in reliance on > the contents of this information is strictly prohibited. If you have > received this email in error, please immediately notify the sender via > telephone or return mail. > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
