External Email - Use Caution Hi Anastasia,
I think I ran trac-all -c config.txt. Regards, Heidi On Thu, Sep 20, 2018 at 10:18 PM Yendiki, Anastasia < ayend...@mgh.harvard.edu> wrote: > What is the trac-all command line that you run? > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Heidi Emmanuel Foo < > heidifo...@gmail.com> > *Sent:* Wednesday, September 19, 2018 11:06:09 PM > *To:* Freesurfer support list > *Subject:* Re: [Freesurfer] trac-all using nifti > > > External Email - Use Caution > > Hi Anastasia, > > Nope, I don't actually get any output and/or log file. > > Regards, > Heidi Foo > > > > On Tue, Sep 18, 2018 at 6:12 PM Yendiki, Anastasia < > ayend...@mgh.harvard.edu> wrote: > > Hi Heidi - The config file that you sent looked fine to me. What is the > trac-all command line that you run, and do you get any other output (like a > trac-all.log file)? > > > Best, > > a.y > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Heidi Emmanuel Foo < > heidifo...@gmail.com> > *Sent:* Monday, September 17, 2018 11:03:47 PM > *To:* Freesurfer support list > *Subject:* Re: [Freesurfer] trac-all using nifti > > > External Email - Use Caution > > Hi Anastasia, > > It seems like I do. Could the problem be the config.txt? > > Thanks! > > Best Regards, > Heidi Foo > > On Tue, Sep 18, 2018 at 12:47 AM Yendiki, Anastasia < > ayend...@mgh.harvard.edu> wrote: > > Hi Heidi – Do you have write permission to create the output directory > /data_int/heidi/forHeidi/Preprocessed? > > a.y > > From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Heidi > Emmanuel Foo <heidifo...@gmail.com> > Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Date: Monday, September 17, 2018 at 12:55 AM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: [Freesurfer] trac-all using nifti > > External Email - Use Caution > > Hi Anastasia, > > I am currently trying to run trac-all with my DWI data. I do not have the > DICOM but only the Nifti files and I would like to use the same bval and > bvec template for every subject. I created a configiration file as > attached. However, I have the following error message: > > : Command not found. > : Command not found. > set: Variable name must begin with a letter. > does not exist.DIR /data_int/heidi/forHeidi/Preprocessed > > It would be great if you could advise me on what to do. > > Thank you! > > Best Regards, > Heidi Foo > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
