You can use matlab. read_curv.m will read in a thickness. read_annotation.m will read in the annotation. Look at the help in both for more info
On 10/06/2018 11:36 AM, lindsay hanford wrote: > > External Email - Use Caution > > Hello Freesurfer Community, > > I am looking for a way to extract thickness values at the level of > each vertex from Freesurfer atlas-based parcellated regions > (aparc.annot), or more generally lobes. Is this possible? > > Using mri_segstats I know it is possible to get more general metrics > such as min, max and average thickness values, and # of voxels. Is it > possible to use an annot file to read out the raw thickness values? > > This post was the closest I could find to answering my question, > however, this was at the group level and not specified for parcellated > regions. > https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-January/022097.html > > Thank you in advance, > > Lindsay > > -- > *Lindsay Hanford, PhD* > *The Buckner Laboratory**|**Harvard University* > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
