External Email - Use Caution The ONLM denoising algorithm in the following package: (https://sites.google.com/site/pierrickcoupe/softwares/denoising-for-medical-imaging<https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsites.google.com%2Fsite%2Fpierrickcoupe%2Fsoftwares%2Fdenoising-for-medical-imaging&data=02%7C01%7Clkrishnamurthy%40gsu.edu%7Cadf6338b011843f3549d08d62f89e5d0%7C515ad73d8d5e4169895c9789dc742a70%7C0%7C0%7C636748666676225518&sdata=F0mfd%2B63mdYPHplRq4jcjz9FuSvE2nUxMxqDlFfIZB4%3D&reserved=0>)
Best, -Lisa From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Glasser, Matthew Sent: Thursday, October 11, 2018 12:39 PM To: Freesurfer support list Subject: Re: [Freesurfer] denoising and recon-all External Email - Use Caution What are you using for denoising? Matt. From: <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Lisa Crystal Krishnamurthy <lkrishnamur...@gsu.edu<mailto:lkrishnamur...@gsu.edu>> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Thursday, October 11, 2018 at 11:05 AM To: "freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>" <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: [Freesurfer] denoising and recon-all External Email - Use Caution Hi, I have found that denoising the MPRAGE prior to FS recon-all seems to improve the segmentation (see attached pdf). However, it is not clear if the denoising algorithm may cause some signal intensity changes (especially in voxels with partial voluming at the edge of the brain) that violate assumptions of recon-all. Could you help me understand what the assumptions of your algorithm are, and what I need to do to make sure my images conform to those assumptions? Your help is greatly appreciated. Best, -Lisa ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
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