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Dear All,

I have segmented the midbrain of each subjects into different subregions
(peduncle, substantia nigra, red nucleus etc) using an atlas. I am trying
to extract the volume of each region (the regions are labeled 101, 102, 103
etc) and also trying to extract the mean intensity from MPRAGE from each of
these regions.

Is there a way to do this in freesurfer tools ? I realize that there is no
color lut / index file associated with this atlas in freesurfer.

Please let me know.

Thank you,

Ani
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