Does that file exist? If not, check to see whether that subject finished or whether there was an error
On 12/20/18 2:37 PM, 塩浜 直 wrote: > External Email - Use Caution > > Hello FreeSurfer Developers, > > I'm attempting to do group analysis for cortical thickness map using Qdec GUI. > We've already have recon-all files that were made by “recon-all –s subjid –i > subjid.nii > –all” on other Linux OS (freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0) > > Firstly, I try to run command “recon-all –s subject –qcache” for each subject > floders. > However, the program stopped with error 1 minutes after starting. > Last line of recon-all.log showed as follows. > > #@# Qdec > Cache preproc lh white.K fsaverage Thu Dec 20 12:03:25 EST 2018 > /Users/emitakahashi/freesurfer/subjects/ASD001/surf > \n > mris_preproc --s ASD001 --hemi lh --meas white.K --target fsaverage --out > lh.white.K.fsaverage.mgh \n > nsubjects > = 1 > ERROR: > cannot find /Users/emitakahashi/freesurfer/subjects/ASD001/surf/lh.white.K > Darwin > emis-mbp.tch.harvard.edu 18.0.0 Darwin Kernel Version 18.0.0: Wed Aug 22 > 20:13:40 PDT 2018; root:xnu-4903.201.2~1/RELEASE_X86_64 x86_64 > > I've searched the list but I can find no similar errors have been reported. > Does > anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached > the recon-all.log in case it's of any use. > 1) FreeSurfer version: Free Surfer 6.0 > 2) Platform: macOS Mojave (64b Intel) > 3) recon-all.log: see attached > > Tadashi Shiohama > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
