It should only do that if you have specified a projection fraction. Is that your full command line? Can you send the full terminal output?
On 1/24/19 4:56 PM, john Anderson wrote: > > External Email - Use Caution > > Hi Dr Greve, I appreciate your guidance very much. > > I followed your suggestion. I put lh.cerebellum in fsaverage and I ran > mri_vol2surf. > as follows: > mri_vol2surf --mov grf.th1.3.pos.sig.cluster.mgh --hemi lh --surf > cerebellum --mni152reg --o grf_onto_cerebellum.nii.gz > > Now I am getting this error > > ERROR: number of vertices in /FSV6.0/fsaverage/surf/lh.thickness does > not match surface (163842,34247) > > Any suggestions are appreciated ;-) > John > > > > > > You will have to put the cerebellar surface in > fsaverage/surf/lh.cerebellum Note use "lh" even if it is the entire > cerebellum as FS commands generally require a hemisphere. > > The run mri_vol2surf specifying --hemi lh --surf cerebellum > > > On 1/23/19 10:04 AM, john Anderson wrote: > > > > > > External Email - Use Caution > > > > > > Dear FS experts, > > > I ran surface based PET analysis on subcortical regions. Then > > > corrected the results for multiple comparisons using the method --grf > > > in the command mri_glmfit-sim. > > > > > > I can visualize the output of multiple comparisons (i.e. the file > > > grf.th1.3.pos.sig.cluster.mgh) on volume using tkmedit, this > > > statistical map shows difference between the groups in the > > > cerebellum.... Instead of visualizing the results on volume, I want to > > > move this file to the cerebellum surface. I already created the > > > cerebellum surfaces from aseg.mgz file in fsaverage using the command > > > mris_tesselate. > > > > > > How can I move the the file grf.th1.3.pos.sig.cluster.mgh from volume > > > space and map it on the cerebellum surface? > > > > > > I tried mri_vol2surf but this command requires the flag --hemi as a > > > result it will map the file "grf.th1.3.pos.sig.cluster.mgh" on > > > cerebral hemispheres (lh or rh) but not the cerebellum.. > > > How can I map the file "grf.th1.3.pos.sig.cluster.mgh" on the > > > cerebellum surface? > > > > > > Thanks for any suggestions, > > > John > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
