Hi Emma
can you run mri_info on the .mgh and .nii.gz volumes and send us the
output? Is the sig.mgh a surface overlay? If so, you can't visualize it
directly, you have to overlay it on a surface (in either .mgh or .nii.gz
foramt)
cheers
Bruce
On Fri, 25 Jan 2019, Bunting, Emma wrote:
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Hi!
I’m trying to convert my sig.mgh output from GLM into a .nii file using
mri_convert, and when I load the resulting volume in freeview this is what I
see.
The command I’m using is:
mri_convert —in-type mgh —out_type nii.gz —out_orientation RAS /(root to
sig.mgh file)/sig.mgh /(root to output file)/sig.nii.gz,
Is there something I should be doing differently?
Many thanks,
Emma
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