External Email - Use Caution On Friday, January 25, 2019, Amrita Bedi <amibedi...@gmail.com> wrote:
> > > Here you go. > On Friday, January 25, 2019, Greve, Douglas N.,Ph.D. < > dgr...@mgh.harvard.edu> wrote: > >> Hi Amrita, can you just paste the text into the email? >> thanks >> doug >> >> On 1/25/19 10:51 AM, Amrita Bedi wrote: >> >> External Email - Use Caution >> Hi Dr Greve, >> >> Ran mris_fwhm and got the attached. >> >> On Thursday, January 24, 2019, Greve, Douglas N.,Ph.D. < >> dgr...@mgh.harvard.edu> wrote: >> >>> Based on the output below, it looks like there are problems with running >>> one of the freesurfer binaries. Can you run mris_fwhm ? Just type the >>> command and return and see what happens. >>> >>> >>> >>> /home/apps/freesurfer-6.0/freesurfer/bin/mris_fwhm --mask >>> /share/VA_Imaging/Projects/salat/2389_TRT/abedi/TRT_0008_rec >>> on/Bold1/fc.lpccseed.surf.lh/mask.nii.gz >>> --i >>> /share/VA_Imaging/Projects/salat/2389_TRT/abedi/TRT_0008_rec >>> on/Bold1/fc.lpccseed.surf.lh/rho1mn.nii.gz >>> --o >>> /share/VA_Imaging/Projects/salat/2389_TRT/abedi/TRT_0008_rec >>> on/Bold1/fc.lpccseed.surf.lh/rho1mn.sm.nii.gz >>> --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd >>> /share/VA_Imaging/Projects/salat/2389_TRT/abedi >>> /home/apps/freesurfer-6.0/freesurfer/bin/mris_fwhm: >>> /home/apps/matlab/MATLAB/R2011b/sys/os/glnxa64/libstdc++.so.6: version >>> `GLIBCXX_3.4.11' not found (required by >>> /home/apps/freesurfer-6.0/freesurfer/bin/mris_fwhm) >>> >>> >>> >>> On 1/23/19 10:11 AM, Amrita Bedi wrote: >>> > >>> > External Email - Use Caution >>> > >>> > Hi Dr Greve, >>> > >>> > Attached is the log file. >>> > >>> > On Tuesday, January 22, 2019, Greve, Douglas N.,Ph.D. >>> > <dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote: >>> > >>> > Can you send the full terminal output and/or the log file? >>> > >>> > On 1/22/19 2:53 PM, Amrita Bedi wrote: >>> > > >>> > > External Email - Use Caution >>> > > >>> > > Hello Freesurfer developers, >>> > > >>> > > I was following the functional connectivity walkthrough for >>> resting >>> > > stage BOLD data and I got the attached error when I ran step 8 >>> > > (selxavg3-sess). Does anyone have any thoughts on how to trouble >>> > shoot >>> > > this? >>> > > Not sure if it’s of any use but I ran this using Freesurfer 6.0 >>> on >>> > > Centos 7.4 >>> > > >>> > > Thank You. >>> > > >>> > > Best >>> > > Amrita >>> > > >>> > > _______________________________________________ >>> > > Freesurfer mailing list >>> > > Freesurfer@nmr.mgh.harvard.edu >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> > >>> > >>> > _______________________________________________ >>> > Freesurfer mailing list >>> > Freesurfer@nmr.mgh.harvard.edu <mailto:freesur...@nmr.mgh.har >>> vard.edu> >>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> > >>> > >>> > _______________________________________________ >>> > Freesurfer mailing list >>> > Freesurfer@nmr.mgh.harvard.edu >>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> _______________________________________________ >> Freesurfer mailing >> listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >>
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