Can you send us a T1.mgz file along with a lh.white file that do not
align when loaded in freeview?
On 1/31/19 10:47 AM, Laboratorio de Neurociencia Funcional wrote:
No, we didn't have the same problem neither with Freesurfer 6.0 or
with the development Freesurfer version. The problem only arises when
we display FS images with Freeview using Freesurfer (6.0 or
development version). For that reason, I asked you about issues
installing Freeview, or wrong interaction between Ubuntu and Freeview.
Any suggestion?
El jue., 31 ene. 2019 a las 16:30, Ruopeng Wang
(<rpw...@nmr.mgh.harvard.edu <mailto:rpw...@nmr.mgh.harvard.edu>>)
escribió:
That’s unlikely. Did FS 6.0 have the same problem?
On Jan 31, 2019, at 9:59 AM, Laboratorio de Neurociencia
Funcional <neuroaging...@gmail.com
<mailto:neuroaging...@gmail.com>> wrote:
External Email - Use Caution
Hi Ruopeng,
we have tried these commands with Bert and with different
datasets and the problem persists. Could the problem be related
to the way that we have installed Freeview or something wrong
between Freeview and the Ubuntu version that we are using (16.04
TLS)?
Best,
Jose
El jue., 31 ene. 2019 a las 15:32, Ruopeng Wang
(<rpw...@nmr.mgh.harvard.edu
<mailto:rpw...@nmr.mgh.harvard.edu>>) escribió:
Your screenshot appears to be from burt data but I assume it
was loaded with similar commands. I could not replicate the
displacement with burt data. Would it be possible to send me
T1.mgz and lh.white file from this OSM_0 subject?
Thanks,
Ruopeng
On Jan 31, 2019, at 9:18 AM, Laboratorio de Neurociencia
Funcional <neuroaging...@gmail.com
<mailto:neuroaging...@gmail.com>> wrote:
External Email - Use Caution
Sure, commands are copied below:
*File > Run Command*
*-v /usr/local/freesurfer/subjects/OSM_0/mri/T1.mgz*
*-v /usr/local/freesurfer/subjects/OSM_0/mri/brainmask.mgz*
*-**f
/usr/local/freesurfer/subjects/OSM_0/surf/lh.white:edgecolor=yellow*
*-f
/usr/local/freesurfer/subjects/OSM_0/surf/lh.pial:edgecolor=red*
*-f
/usr/local/freesurfer/subjects/OSM_0/surf/rh.white:edgecolor=yellow*
*-f
/usr/local/freesurfer/subjects/OSM_0/surf/rh.pial:edgecolor=red*
Looking forward your comments.
Best, Jose*
*
El jue., 31 ene. 2019 a las 14:39, Ruopeng Wang
(<rpw...@nmr.mgh.harvard.edu
<mailto:rpw...@nmr.mgh.harvard.edu>>) escribió:
Can you share the freeview command you run to load the
these data?
Ruopeng
On Jan 31, 2019, at 7:31 AM, Laboratorio de
Neurociencia Funcional <neuroaging...@gmail.com
<mailto:neuroaging...@gmail.com>> wrote:
External Email - Use Caution
Dear Freesurfers,
we have installed the updated Freeview version in the
development version of Freesurfer (Centos 6, 18 january
build), but Bert images appear displaced when they are
loaded with this version of Freeview. The same
displacement occurs when other dataset is used. Please
find attached a screenshot to display the issue. Would
you please help me to solve the problem?
Thank you in advance.
Best,
Jose
<Image
displacement_Freeview.png>_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
