You have to convert the annotation to a volume using mri_aparc2aseg (look at recon-all.log for an example, but note that you'll need to specify the output so that it does not overwrite). You'll then need to look in the output segmentation and see what the segmentation ids are
On 3/7/19 4:13 PM, std...@virgilio.it wrote: > > External Email - Use Caution > > Hi list, > > I'd like to use the regions included in Yeo 17 networks > (https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Yeo2011_fcMRI_clustering). > > > in FS-FAST. > > Which is the command line to be used to create a segmentation in > $SUBJECTS_DIR/$subject/mri in the same format as aseg.mgz? (I'd like > to use it to run fcseed-config, specify -seg yourseg.mgz -segid). > > Thanks > > Stefano > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
