External Email - Use Caution This fixed the issue:
sudo rm -f /Applications/freesurfer/lib/gcc/lib/libgomp.1.dylib sudo ln -s /usr/local/Cellar/gcc/8.2.0/lib/gcc/8/libgomp.1.dylib /Applications/freesurfer/lib/gcc/lib/libgomp.1.dylib On Mar 11, 2019, at 6:14 PM, Shana Adise <shana.ad...@uvm.edu<mailto:shana.ad...@uvm.edu>> wrote: Of note, I forgot to add that disabling SIP does not fix the problem: http://osxdaily.com/2015/10/05/disable-rootless-system-integrity-protection-mac-os-x/ On Mar 11, 2019, at 5:29 PM, Shana Adise <shana.ad...@uvm.edu<mailto:shana.ad...@uvm.edu>> wrote: External Email - Use Caution Hello, I originally ran into some hiccups with AFNI’s @SUMA_make_spec_FS, which stems from a freesurfer error: 1. Error one: Abort dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib Abort c_ras: Subscript out of range. c_ras: Subscript out of range. 2. It appears that you are already aware of this issue: https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes 3. However, I have a new issue when trying to run sudo -E fs_update rsync -zbrlv --progress --suffix=.1552339020_bakrsync://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c/* /Applications/freesurfer receiving file list ... rsync: change_dir "/dist/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c" (in pub) failed: No such file or directory (2) 0 files to consider sent 4 bytes received 9 bytes 26.00 bytes/sec total size is 0 speedup is 0.00 rsync error: some files could not be transferred (code 23) at /BuildRoot/Library/Caches/com.apple.xbs/Sources/rsync/rsync-52.200.1/rsync/main.c(1404) [receiver=2.6.9] 4. Navigating to this site gives file not found: https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c Any suggestions? Thanks, Shana _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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