It looks like the dicom file is the localizer/scout. It is not the anatomical (eg, only 3 slices). You can try running dcmunpack to get a list of runs in the dicom folder. Then pass one of the dicoms from the anatomical to recon-all
On 3/27/19 4:50 PM, Z Hessam wrote: > > External Email - Use Caution > > I get them from a mri center > > On Thursday, March 28, 2019, Bruce Fischl <fis...@nmr.mgh.harvard.edu > <mailto:fis...@nmr.mgh.harvard.edu>> wrote: > > where did you get the dicoms? > > On Thu, 28 Mar 2019, Z Hessam wrote: > > > >> > >> External Email - Use Caution > >> > >> Soory , why this error has been occured? How the column of all zero > is made? > >> > >> On Tuesday, March 19, 2019, Bruce Fischl > <fis...@nmr.mgh.harvard.edu <mailto:fis...@nmr.mgh.harvard.edu>> wrote: > >> > p.s. you can see this in the log file: > >> > > >> > Image information > >> > RunNo 0 > >> > SeriesNo 1 > >> > ImageNo 2 > >> > NImageRows 512 > >> > NImageCols 512 > >> > NFrames 1 > >> > SliceArraylSize 3 > >> > IsMosaic 0 > >> > ImgPos 130.0000 -0.0000 130.0000 > >> > VolRes 0.5078 0.5078 9.6000 > >> > VolDim 512 512 3 > >> > Vc -1.0000 -0.0000 0.0000 > >> > Vr -0.0000 -0.0000 -1.0000 > >> > Vs -1.0000 -0.0000 0.0000 > >> > VolCenter -14.4000 -0.0000 0.0000 > >> > TransferSyntaxUID 1.2.840.10008.1.2.1 > >> > > >> > > >> > syou should never have a column (or row) of all 0s > >> > > >> > On Tue, 19 Mar 2019, Z Hessam wrote: > >> > > >> >> > >> >> External Email - Use Caution > >> >> > >> >> Hello FreeSurfer Developers, > >> >> > >> >> I,m attempting to convert my dicom files to *.mgz, with command > line in below: > >> >> $ recon-all -i /data/14ZOGOO/1.dcm -autorecon1 -subjid d14zogoo > >> >> > >> >> but it exits with error and the recon-all.log file is attached. > >> >> why this error occur and what should I do to solve it? > >> >> > >> >> > >> > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
